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  5. Sam_g49873

Sam_g49873


Description : regulatory factor *(TZF) of mRNA stress granule formation & original description: none


Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49873

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00102750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AT5G44260 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 OrthoFinder output from all 47 species
Ala_g05322 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ala_g13061 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g01096 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14516.t1 Aspi01Gene14516 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aspi01Gene46484.t1 Aspi01Gene46484 regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g03917 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g04032 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g05838 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g24777 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g33760 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Cba_g74665 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Ceric.02G081600.1 Ceric.02G081600 regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Dcu_g14003 No alias regulatory factor *(TZF) of mRNA stress granule... 0.01 OrthoFinder output from all 47 species
Ehy_g08338 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
GSVIVT01024728001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01032807001 SZF2, ATSZF2, ZFAR1, CZF1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Msp_g13456 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Msp_g15903 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Nbi_g02332 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pnu_g20981 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Ppi_g04592 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005148 No alias regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Solyc03g063680.3.1 Solyc03g063680 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Spa_g31285 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 66 177
IPR000571 Znf_CCCH 356 376
No external refs found!