AMTR_s00002p00250180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.351

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component


Gene families : OG_01_0001535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001535_tree ,
OG_02_0002332 (LandPlants) Phylogenetic Tree(s): OG_02_0002332_tree ,
OG_03_0003310 (SeedPlants) Phylogenetic Tree(s): OG_03_0003310_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00250180
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 Archaeplastida
GSVIVT01016203001 No alias Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
LOC_Os02g53230.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 Archaeplastida
LOC_Os05g43060.1 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 Archaeplastida
LOC_Os06g10620.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 Archaeplastida
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 Archaeplastida
Pp3c16_360V3.1 No alias global transcription factor group A2 0.02 Archaeplastida
Solyc11g008150.3.1 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 Archaeplastida
Zm00001e027389_P004 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 Archaeplastida
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 Archaeplastida
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 Archaeplastida
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 LandPlants
LOC_Os02g53230.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
LOC_Os06g10620.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 LandPlants
Mp5g18000.1 No alias no hits & (original description: none) 0.01 LandPlants
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 SeedPlants
LOC_Os02g53230.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 SeedPlants
LOC_Os06g10620.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 SeedPlants
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 SeedPlants
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005824 KOW 120 150
IPR005100 NGN-domain 32 108
No external refs found!