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  5. Sam_g49677

Sam_g49677


Description : violaxanthin de-epoxidase *(VDE) & original description: none


Gene families : OG0006528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49677

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00117p00058770 NPQ1, AVDE1,... Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
AT1G08550 NPQ1, AVDE1 non-photochemical quenching 1 0.02 OrthoFinder output from all 47 species
Adi_g112593 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11360 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene33475.t1 NPQ1, AVDE1,... violaxanthin de-epoxidase *(VDE) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s1476.g103495 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g07958 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G096200.1 NPQ1, AVDE1,... not classified & original description: pacid=50585765... 0.02 OrthoFinder output from all 47 species
Dcu_g11651 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01026405001 NPQ1, AVDE1 Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
Gb_27593 NPQ1, AVDE1 violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.06 OrthoFinder output from all 47 species
Mp7g15960.1 NPQ1, AVDE1 violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.04 OrthoFinder output from all 47 species
Msp_g12644 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34640 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019899 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description:... 0.04 OrthoFinder output from all 47 species
Solyc04g050930.3.1 NPQ1, AVDE1,... violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.06 OrthoFinder output from all 47 species
Spa_g43709 NPQ1, AVDE1 violaxanthin de-epoxidase *(VDE) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008403_P001 NPQ1, AVDE1,... violaxanthin de-epoxidase. violaxanthin de-epoxidase (VDE) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046422 violaxanthin de-epoxidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010788 VDE_dom 156 396
No external refs found!