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  5. Sam_g49284

Sam_g49284


Description : germ cell differentiation factor *(RKD) & original description: none


Gene families : OG0000385 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49284

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00165760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.NIN-like... 0.02 OrthoFinder output from all 47 species
AT4G35590 No alias RWP-RK domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g019526 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Aspi01Gene14002.t1 Aspi01Gene14002 germ cell differentiation factor *(RKD) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000881.30 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre03.g149400 No alias RNA biosynthesis.transcriptional activation.NIN-like... 0.01 OrthoFinder output from all 47 species
Dac_g02080 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g10890 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g18785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g12970.1 LOC_Os12g12970 transcription factor (RKD) 0.02 OrthoFinder output from all 47 species
Msp_g24611 No alias germ cell differentiation factor *(RKD) & original... 0.04 OrthoFinder output from all 47 species
Ore_g29160 No alias germ cell differentiation factor *(RKD) & original... 0.01 OrthoFinder output from all 47 species
Sam_g00110 No alias RKD-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR003035 RWP-RK_dom 374 421
No external refs found!