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  5. Sam_g49026

Sam_g49026


Description : transcriptional regulator *(DYT1/AMS) & original description: none


Gene families : OG0006543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49026

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00127110 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g014788 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Adi_g105557 AMS transcriptional regulator *(DYT1/AMS) & original... 0.01 OrthoFinder output from all 47 species
Aop_g70080 AMS transcriptional regulator *(DYT1/AMS) & original... 0.07 OrthoFinder output from all 47 species
Ceric.15G077800.1 AMS, Ceric.15G077800 transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Dde_g46165 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01013720001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
GSVIVT01013744001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01024008001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02820.1 AMS, LOC_Os02g02820 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g57915 AMS transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
MA_89559g0020 No alias Transcription factor ABORTED MICROSPORES OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g44010 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g11389 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Ore_g07281 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01138 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species
Solyc08g062780.2.1 AMS, Solyc08g062780 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Spa_g47867 AMS transcriptional regulator *(DYT1/AMS) & original... 0.06 OrthoFinder output from all 47 species
Tin_g45475 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 413 456
IPR025610 MYC/MYB_N 5 148
No external refs found!