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  5. Sam_g48676

Sam_g48676


Description : E3 ubiquitin ligase *(PIRE) & original description: none


Gene families : OG0001463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48676

Target Alias Description ECC score Gene Family Method Actions
AT5G62910 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g040517 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32309 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30181.t1 Aspi01Gene30181 E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29244 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15078 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01110 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002587 No alias E3 ubiquitin ligase *(PIRE) & original description: CDS=293-1354 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015303 No alias E3 ubiquitin ligase *(PIRE) & original description: CDS=420-1622 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!