Sam_g47748

Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g47748
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AT5G14320	No alias	Ribosomal protein S13/S18 family	0.04	OrthoFinder output from all 47 species
Adi_g042167	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g00666	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g40481	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aspi01Gene52886.t1	Aspi01Gene52886	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035921	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.05G059300.1	Ceric.05G059300	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre12.g493950	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dcu_g44492	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g14856	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ehy_g00682	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01008933001	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
LOC_Os03g49710.1	LOC_Os03g49710	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species
Len_g07705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g00631	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Mp1g18230.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.05	OrthoFinder output from all 47 species
Msp_g02627	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g15772	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g09656	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g02591	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo140847	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Spa_g00577	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Zm00001e005396_P004	Zm00001e005396	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004506	squalene monooxygenase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	79	187

External Links

No external refs found!

Sam_g47748

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation