Sam_g47672

Description : component *(uL23) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001401_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g47672

Target	Alias	Description	ECC score	Gene Family Method
AT2G39460	RPL23A, RPL23AA, ATRPL23A	ribosomal protein L23AA	0.03	OrthoFinder output from all 47 species
AT3G55280	RPL23AB	ribosomal protein L23AB	0.03	OrthoFinder output from all 47 species
Aob_g18763	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g12745	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.14G096300.1	RPL23AB, Ceric.14G096300	component *(uL23) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000037.39	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre06.g282500	RPL23A, RPL23AA, ATRPL23A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.01	OrthoFinder output from all 47 species
Dcu_g41671	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g04260	RPL23A, RPL23AA, ATRPL23A	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01025041001	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01025606001	No alias	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
LOC_Os01g24690.1	RPL23AB, LOC_Os01g24690	component RPL23a of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os04g42270.2	RPL23AB, LOC_Os04g42270	component RPL23a of LSU proteome component	0.01	OrthoFinder output from all 47 species
Mp2g00570.1	RPL23AB	component RPL23a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Nbi_g12753	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c12_19360V3.1	RPL23AB, Pp3c12_19360	ribosomal protein L23AB	0.01	OrthoFinder output from all 47 species
Pp3c3_21160V3.1	RPL23AB, Pp3c3_21160	ribosomal protein L23AB	0.03	OrthoFinder output from all 47 species
Pp3c4_8620V3.1	RPL23AB, Pp3c4_8620	ribosomal protein L23AB	0.01	OrthoFinder output from all 47 species
Ppi_g52143	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g00769	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g06116	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06117	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g22104	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo271663	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Spa_g01808	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e007662_P001	RPL23AB, Zm00001e007662	component RPL23a of LSU proteome component	0.01	OrthoFinder output from all 47 species
Zm00001e041164_P001	RPL23A, RPL23AA,...	component RPL23a of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013025	Ribosomal_L25/23	100	166
IPR005633	Ribosomal_L23/L25_N	42	91

External Links

No external refs found!

Sam_g47672

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation