Sam_g46807

Description : component *(bL31c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0005954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005954_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g46807

Target	Alias	Description	ECC score	Gene Family Method
AT1G75350	emb2184	Ribosomal protein L31	0.1	OrthoFinder output from all 47 species
Als_g09129	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g39319	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Azfi_s0288.g063251	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.01G009700.1	emb2184, Ceric.01G009700	component *(bL31c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cre08.g365400	emb2184	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dcu_g09395	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g22754	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01009748001	emb2184	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
LOC_Os01g44210.1	emb2184, LOC_Os01g44210	component psRPL31 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Len_g07156	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_10430444g0010	emb2184	component psRPL31 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp7g17190.1	emb2184	component psRPL31 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Nbi_g12842	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pnu_g19124	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c3_430V3.1	emb2184, Pp3c3_430	Ribosomal protein L31	0.01	OrthoFinder output from all 47 species
Pp3c4_22510V3.1	emb2184, Pp3c4_22510	Ribosomal protein L31	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013860	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Solyc04g080630.4.1	emb2184, Solyc04g080630	component psRPL31 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g16064	emb2184	component *(bL31c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Zm00001e020389_P001	emb2184, Zm00001e020389	component psRPL31 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002150	Ribosomal_L31	50	114

External Links

No external refs found!

Sam_g46807

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation