Sam_g46162

Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g46162

Target	Alias	Description	ECC score	Gene Family Method
AT2G39390	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
AT3G09500	No alias	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
Aop_g17159	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g21832	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g23213	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g24019	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g52553	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g64472	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.10G004300.1	Ceric.10G004300	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.79	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g01910	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g29193	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g33187	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g44954	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01005972001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01025050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Gb_33813	No alias	component RPL35 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Lfl_g31826	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g02937	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g16217	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g06793	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pnu_g30661	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c13_5200V3.1	Pp3c13_5200	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
Pp3c3_2800V3.1	Pp3c3_2800	Ribosomal L29 family protein	0.02	OrthoFinder output from all 47 species
Ppi_g22608	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05963	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g06030	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g31234	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g31723	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g47711	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g48098	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo438324	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Smo79331	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Zm00001e008428_P002	Zm00001e008428	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e014607_P001	Zm00001e014607	component RPL35 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	6	61

External Links

No external refs found!

Sam_g46162

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation