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  5. Lfl_g29709

Lfl_g29709


Description : substrate adaptor *(NRL) of CUL3-based E3 ubiquitin ligase complex & original description: none


Gene families : OG0000772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g29709
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AT1G30440 No alias Phototropic-responsive NPH3 family protein 0.03 OrthoFinder output from all 47 species
Adi_g014854 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.06 OrthoFinder output from all 47 species
Als_g09480 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Dcu_g14448 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os03g43990.1 LOC_Os03g43990 BTB/POZ domain-containing protein At1g30440... 0.02 OrthoFinder output from all 47 species
LOC_Os12g41910.2 LOC_Os12g41910 BTB/POZ domain-containing protein At1g30440... 0.03 OrthoFinder output from all 47 species
Nbi_g07594 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Ore_g27112 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ppi_g09262 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009652 No alias not classified & original description: CDS=136-2424 0.05 OrthoFinder output from all 47 species
Sam_g17668 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Sam_g19593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37320 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06732 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.01 OrthoFinder output from all 47 species
Spa_g39042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019629_P002 Zm00001e019629 BTB/POZ domain-containing protein At5g03250... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 25 114
IPR027356 NPH3_dom 212 475
No external refs found!