Sam_g43171

Description : component *(uL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g43171
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00089p00040540	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT3G07110	No alias	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
AT3G24830	No alias	Ribosomal protein L13 family protein	0.05	OrthoFinder output from all 47 species
AT4G13170	No alias	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
AT5G48760	No alias	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
Aop_g22675	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0272.g061284	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000792.29	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre12.g532550	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g00316	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g06037	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
LOC_Os03g54890.1	LOC_Os03g54890	component RPL13a of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_186340g0010	No alias	component RPL13a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g06781	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g32776	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_17280V3.1	Pp3c11_17280	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
Pp3c19_10330V3.1	Pp3c19_10330	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
Ppi_g25630	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g05746	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07579	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g31286	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo166650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Spa_g44762	No alias	component *(uL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e005719_P002	Zm00001e005719	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e012017_P002	Zm00001e012017	component RPL13a of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003796	lysozyme activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006027	glycosaminoglycan catabolic process	IEP	HCCA
BP	GO:0009253	peptidoglycan catabolic process	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0061783	peptidoglycan muralytic activity	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	2	96

External Links

No external refs found!

Sam_g43171

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation