Sam_g42614

Description : component *(eL31) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000630 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000630_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g42614
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00233860	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Adi_g048332	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g113545	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g120495	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g24458	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g58224	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g10112	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g50668	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g50669	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g71326	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g08011	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.13G014100.1	Ceric.13G014100	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020703.20	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre12.g489153	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g26744	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g38806	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g38330	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g45156	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g29472	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01015251001	No alias	60S ribosomal protein L31 OS=Nicotiana glutinosa	0.03	OrthoFinder output from all 47 species
GSVIVT01032061001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_05851	No alias	component RPL31 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Gb_24728	No alias	component RPL31 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os02g48660.1	LOC_Os02g48660	component RPL31 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os06g21480.1	LOC_Os06g21480	component RPL31 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g03010	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Mp7g18320.1	No alias	component RPL31 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Ore_g04896	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c10_8090V3.1	Pp3c10_8090	Ribosomal protein L31e family protein	0.01	OrthoFinder output from all 47 species
Pp3c14_7550V3.1	Pp3c14_7550	Ribosomal protein L31e family protein	0.02	OrthoFinder output from all 47 species
Pp3c1_34390V3.1	Pp3c1_34390	Ribosomal protein L31e family protein	0.02	OrthoFinder output from all 47 species
Ppi_g19792	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g51464	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g05859	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g09097	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g36402	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g39914	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g48531	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo268515	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc05g008010.3.1	Solyc05g008010	component RPL31 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc12g008720.2.1	Solyc12g008720	component RPL31 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g05504	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g43533	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g25963	No alias	component *(eL31) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e003520_P001	Zm00001e003520	component RPL31 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e023413_P001	Zm00001e023413	component RPL31 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e036927_P001	Zm00001e036927	component RPL31 of LSU proteome component	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0007265	Ras protein signal transduction	IEP	HCCA
BP	GO:0007266	Rho protein signal transduction	IEP	HCCA
MF	GO:0008190	eukaryotic initiation factor 4E binding	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0045947	negative regulation of translational initiation	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000054	Ribosomal_L31e	17	98

External Links

No external refs found!

Sam_g42614

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation