Sam_g42204

Description : component *(eS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g42204
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00207750	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
AMTR_s00110p00069670	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT3G02080	No alias	Ribosomal protein S19e family protein	0.1	OrthoFinder output from all 47 species
AT5G15520	No alias	Ribosomal protein S19e family protein	0.04	OrthoFinder output from all 47 species
AT5G61170	No alias	Ribosomal protein S19e family protein	0.1	OrthoFinder output from all 47 species
Adi_g019924	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g122694	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g20886	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g16944	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g44683	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00927	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g14490	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aop_g39336	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g57031	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g011210	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g29626	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g55002	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.24G077600.1	Ceric.24G077600	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021017.6	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Cre02.g106600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Dac_g22936	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g21083	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g29784	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g30993	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dde_g00231	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01007908001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01012199001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Gb_40460	No alias	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g31090.1	LOC_Os03g31090	component RPS19 of SSU proteome	0.1	OrthoFinder output from all 47 species
Lfl_g21216	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_10427917g0010	No alias	component RPS19 of SSU proteome	0.11	OrthoFinder output from all 47 species
MA_7685779g0010	No alias	component RPS19 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_9301411g0010	No alias	component RPS19 of SSU proteome	0.09	OrthoFinder output from all 47 species
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
Msp_g43925	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g27238	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c14_19640V3.1	Pp3c14_19640	Ribosomal protein S19e family protein	0.04	OrthoFinder output from all 47 species
Pp3c17_15200V3.1	Pp3c17_15200	Ribosomal protein S19e family protein	0.04	OrthoFinder output from all 47 species
Pp3c1_28780V3.1	Pp3c1_28780	Ribosomal protein S19e family protein	0.05	OrthoFinder output from all 47 species
Pp3c2_10060V3.1	Pp3c2_10060	Ribosomal protein S19e family protein	0.06	OrthoFinder output from all 47 species
Ppi_g00396	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Ppi_g26502	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g41385	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g50718	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019638	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g12907	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g14851	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g22603	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g22812	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g27047	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g30614	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g31814	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g46027	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Smo153225	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Solyc03g115360.3.1	Solyc03g115360	component RPS19 of SSU proteome	0.09	OrthoFinder output from all 47 species
Solyc12g039120.2.1	Solyc12g039120	component RPS19 of SSU proteome	0.1	OrthoFinder output from all 47 species
Spa_g02912	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g11663	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g41565	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g43576	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g14125	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e002011_P001	Zm00001e002011	component RPS19 of SSU proteome	0.11	OrthoFinder output from all 47 species
Zm00001e038053_P003	Zm00001e038053	component RPS19 of SSU proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	23	159

External Links

No external refs found!

Sam_g42204

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation