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  5. Lfl_g29496

Lfl_g29496


Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none


Gene families : OG0005239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g29496
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Ala_g03176 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aob_g05700 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000917 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ceric.05G082800.1 Ceric.05G082800 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Cre01.g030350 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from all 47 species
GSVIVT01012660001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
LOC_Os08g32930.1 LOC_Os08g32930 RbcX assembly factor involved in RuBisCo assembly 0.05 OrthoFinder output from all 47 species
Len_g01522 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Len_g04553 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Msp_g09275 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Nbi_g08122 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ore_g13156 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Pir_g15068 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Solyc02g081060.4.1 Solyc02g081060 RbcX assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species
Spa_g10277 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Zm00001e022404_P003 Zm00001e022404 RbcX assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0044183 protein folding chaperone IEA Interproscan
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 69 173
No external refs found!