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  5. Sam_g40748

Sam_g40748


Description : Golgin-type membrane tethering protein *(GC1) & original description: none


Gene families : OG0005613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40748

Target Alias Description ECC score Gene Family Method Actions
Aev_g18873 GC1 Golgin-type membrane tethering protein *(GC1) & original... 0.02 OrthoFinder output from all 47 species
Als_g16174 GC1 Golgin-type membrane tethering protein *(GC1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.01G051800.1 GC1, Ceric.01G051800 Golgin-type membrane tethering protein *(GC1) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03994 GC1 Golgin-type membrane tethering protein *(GC1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01015314001 GC1 Vesicle trafficking.target membrane tethering.Golgi... 0.02 OrthoFinder output from all 47 species
Len_g36025 GC1 Golgin-type membrane tethering protein *(GC1) & original... 0.02 OrthoFinder output from all 47 species
Pir_g14543 GC1 Golgin-type membrane tethering protein *(GC1) & original... 0.02 OrthoFinder output from all 47 species
Solyc12g008390.3.1 GC1, Solyc12g008390 golgin (GC1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007030 Golgi organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR019177 Golgin_subfamily_A_member_5 428 682
No external refs found!