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  5. Sam_g40671

Sam_g40671


Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40671

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00165180 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.02 OrthoFinder output from all 47 species
Adi_g019966 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107007 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08926 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22220 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49532.t1 BP, BP1, KNAT1,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000431 KNAT7, IXR11 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g05770 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G020400.1 KNAT3, Ceric.13G020400 KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g30696 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g47016.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Ore_g19225 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25139 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31220 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02102 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06826 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004352 KNAT4 KNOX-type transcription factor & original description: CDS=1-1356 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633 KNAT7, IXR11 not classified & original description: CDS=1-1266 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g47381 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000173_P003 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e005825_P002 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 272 311
IPR005541 KNOX2 115 165
IPR005540 KNOX1 21 44
No external refs found!