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  5. Sam_g40587

Sam_g40587


Description : not classified & original description: none


Gene families : OG0001886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g40587

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00026390 evm_27.TU.AmTr_v1... Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Ala_g21580 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Als_g48705 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Aob_g40174 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene53113.t1 Aspi01Gene53113 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ceric.1Z073200.1 Ceric.1Z073200 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Cre02.g078150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g03214 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
GSVIVT01028117001 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
GSVIVT01035014001 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Len_g10488 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g11003 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
MA_10430074g0010 No alias Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder output from all 47 species
MA_58934g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g00710.1 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Msp_g38962 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Pnu_g25433 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0178.g024725 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc01g060050.3.1 Solyc01g060050 Dynein assembly factor with WDR repeat domains 1... 0.04 OrthoFinder output from all 47 species
Solyc01g079510.3.1 Solyc01g079510 Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder output from all 47 species
Zm00001e025834_P004 Zm00001e025834 Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 410 435
IPR001680 WD40_repeat 294 326
IPR001680 WD40_repeat 251 288
IPR001680 WD40_repeat 332 372
No external refs found!