1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g39902

Sam_g39902


Description : cyclic nucleotide-gated cation channel *(CNGC) & original description: none


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39902
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00210p00019190 CNGC5, ATCNGC5,... Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
AT1G15990 CNGC7, ATCNGC7 cyclic nucleotide gated channel 7 0.03 OrthoFinder output from all 47 species
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.03 OrthoFinder output from all 47 species
AT3G48010 ATCNGC16, CNGC16 cyclic nucleotide-gated channel 16 0.03 OrthoFinder output from all 47 species
Adi_g018666 CNGC7, ATCNGC7 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ala_g13501 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Aob_g32862 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70565.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036528 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Cba_g15401 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ceric.13G070300.1 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.05 OrthoFinder output from all 47 species
Ceric.23G068600.1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.5 ATCNGC9, CNGC9 Putative cyclic nucleotide-gated ion channel 8... 0.01 OrthoFinder output from all 47 species
Dcu_g36527 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.07 OrthoFinder output from all 47 species
GSVIVT01007785001 CNGC18, ATCNGC18 Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
GSVIVT01015970001 ATCNGC8, CNGC8 Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
GSVIVT01025208001 CNGC15, ATCNGC15 Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
GSVIVT01028711001 ATCNGC1, CNGC1 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
GSVIVT01029404001 ATCNGC20, CNGC20, CNBT1 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
LOC_Os04g55080.1 ATCNGC6, CNGC6,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08850.1 ATCNGC17,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
LOC_Os06g10580.1 ATCNGC20,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
LOC_Os09g38580.1 ATCNGC17,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Msp_g14154 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Nbi_g11227 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Nbi_g30846 DND1, ATCNGC2, CNGC2 temperature sensor protein *(CNGC2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03359 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ore_g09435 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ore_g20891 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Pir_g25901 ATCNGC10, CNGC10, ACBK1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44974 ATCNGC1, CNGC1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Pnu_g18538 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ppi_g05274 ATCNGC9, CNGC9 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ppi_g06447 CNGC7, ATCNGC7 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004661 CNGC7, ATCNGC7 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007638 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Solyc03g098210.4.1 ATCNGC20,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Solyc07g005590.3.1 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel (CNGC) 0.05 OrthoFinder output from all 47 species
Solyc07g006510.3.1 ATCNGC17,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
Solyc12g010010.2.1 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Tin_g01151 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Zm00001e011591_P002 CNGC18,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Zm00001e024846_P003 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Zm00001e030701_P001 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 507 597
IPR005821 Ion_trans_dom 97 413
No external refs found!