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  5. Sam_g39879

Sam_g39879


Description : E3 ubiquitin ligase *(NLA) & original description: none


Gene families : OG0001271 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39879

Target Alias Description ECC score Gene Family Method Actions
Aev_g16994 NLA, BAH1 E3 ubiquitin ligase *(NLA) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04007 NLA, BAH1 E3 ubiquitin ligase *(NLA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31170 NLA, BAH1 E3 ubiquitin ligase *(NLA) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011896 NLA, BAH1 E3 ubiquitin ligase *(NLA) & original description: CDS=1-1170 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020129 NLA, BAH1 E3 ubiquitin ligase *(NLA) & original description: CDS=771-1736 0.03 OrthoFinder output from all 47 species
Sam_g48617 No alias E3 ubiquitin ligase *(NLA) & original description: none 0.03 OrthoFinder output from all 47 species
Smo91888 NLA, BAH1 E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo93997 NLA, BAH1 Probable E3 ubiquitin-protein ligase BAH1-like 1... 0.05 OrthoFinder output from all 47 species
Tin_g14860 NLA, BAH1 E3 ubiquiTin ligase *(NLA) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 106 152
No external refs found!