Sam_g39875

Description : component *(FES1) of FRI-C transcription effector complex & original description: none

Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g39875

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00110320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C3H zinc...	0.02	OrthoFinder output from all 47 species
AMTR_s00154p00086540	evm_27.TU.AmTr_v1...	Zinc finger CCCH domain-containing protein 38...	0.02	OrthoFinder output from all 47 species
AT3G18640	No alias	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.03	OrthoFinder output from all 47 species
Adi_g113323	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ala_g14556	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Als_g05138	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ceric.20G066500.1	Ceric.20G066500	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Cre01.g003450	No alias	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g18865	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ehy_g26937	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
GSVIVT01008114001	No alias	Zinc finger CCCH domain-containing protein 38...	0.02	OrthoFinder output from all 47 species
GSVIVT01010035001	ACCD	RNA biosynthesis.transcriptional activation.C3H zinc...	0.03	OrthoFinder output from all 47 species
Gb_00875	No alias	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Gb_19122	No alias	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Gb_26302	No alias	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g11580.1	LOC_Os03g11580	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Lfl_g05738	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
MA_10435667g0010	No alias	Zinc finger CCCH domain-containing protein 38...	0.02	OrthoFinder output from all 47 species
MA_321233g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp1g05400.1	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.02	OrthoFinder output from all 47 species
Pir_g18853	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Pir_g41479	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Pnu_g04551	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g08786	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Solyc03g006350.3.1	FES1, Solyc03g006350	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc04g064800.4.1	Solyc04g064800	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Spa_g07473	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	HCCA
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	HCCA
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	24	68

External Links

No external refs found!

Sam_g39875

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation