Sam_g39708

Description : not classified & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g39708

Target	Alias	Description	ECC score	Gene Family Method
Als_g31913	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene32282.t1	DCL4, ATDCL4,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene47448.t2	DCL1, CAF,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01358	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Ehy_g16399	ATDCL2, DCL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_311065g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Nbi_g25122	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g37606	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018689	DCL1, CAF,...	not classified & original description: CDS=1-1830	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022615	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Sam_g27643	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	367	475
IPR011545	DEAD/DEAH_box_helicase_dom	28	189

External Links

No external refs found!