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  5. Sam_g39443

Sam_g39443


Description : component *(eL32) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39443

Target Alias Description ECC score Gene Family Method Actions
AT4G18100 No alias Ribosomal protein L32e 0.1 OrthoFinder output from all 47 species
AT5G46430 No alias Ribosomal protein L32e 0.07 OrthoFinder output from all 47 species
Adi_g018845 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g030118 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g126327 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g126879 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g130264 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aev_g03534 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g32062 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ala_g37942 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g10549 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g24582 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g31659 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g44599 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Als_g59277 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00898 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g13748 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g17104 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22038.t1 Aspi01Gene22038 component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0030.g024411 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0061.g035078 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g21008 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g36412 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g75321 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.22G081000.1 Ceric.22G081000 component *(eL32) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ceric.39G032400.1 Ceric.39G032400 component *(eL32) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.140 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Cre06.g289550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Dac_g04434 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g18095 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dac_g27003 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g35048 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g35080 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g04107 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g18228 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01005150001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01021377001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Gb_36437 No alias component RPL32 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os08g41300.1 LOC_Os08g41300 component RPL32 of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os09g32500.1 LOC_Os09g32500 component RPL32 of LSU proteome component 0.18 OrthoFinder output from all 47 species
LOC_Os09g32520.1 LOC_Os09g32520 component RPL32 of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os09g32532.1 LOC_Os09g32532 component RPL32 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Lfl_g14525 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10434621g0010 No alias component RPL32 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_41569g0010 No alias component RPL32 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp7g12480.1 No alias component RPL32 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Msp_g02643 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g34354 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Msp_g35436 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g10419 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g10779 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g41192 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g03230 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g61740 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c14_10580V3.1 Pp3c14_10580 Ribosomal protein L32e 0.03 OrthoFinder output from all 47 species
Pp3c1_32490V3.1 Pp3c1_32490 Ribosomal protein L32e 0.04 OrthoFinder output from all 47 species
Pp3c2_9590V3.1 Pp3c2_9590 Ribosomal protein L32e 0.11 OrthoFinder output from all 47 species
Ppi_g20685 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g52088 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0258.g026846 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g12910 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g14494 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g30727 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g30905 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo146656 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Solyc02g070310.3.1 Solyc02g070310 component RPL32 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc08g006900.3.1 Solyc08g006900 component RPL32 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g02483 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g11641 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g17123 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g21119 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g36775 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g41176 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Tin_g00154 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g11973 No alias component *(eL32) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e003623_P002 Zm00001e003623 component RPL32 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e010105_P002 Zm00001e010105 component RPL32 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e021938_P001 Zm00001e021938 component RPL32 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Zm00001e034604_P001 Zm00001e034604 component RPL32 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Zm00001e034606_P001 Zm00001e034606 component RPL32 of LSU proteome component 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
CC GO:0000313 organellar ribosome IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001515 Ribosomal_L32e 51 157
No external refs found!