1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g39178

Sam_g39178


Description : psbJ/psbN-translation activator *(LPE1) & original description: none


Gene families : OG0007915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007915_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39178

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00149530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46610... 0.02 OrthoFinder output from all 47 species
AT3G46610 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g057096 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g14659 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g06057 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g03366 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g15426 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.15G067200.1 Ceric.15G067200 psbJ/psbN-translation activator *(LPE1) & original... 0.07 OrthoFinder output from all 47 species
Ceric.23G070300.1 Ceric.23G070300 psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01003980001 No alias Pentatricopeptide repeat-containing protein At3g46610... 0.03 OrthoFinder output from all 47 species
LOC_Os12g18640.1 LOC_Os12g18640 psbJ/psbN-translation activator (LPE1) 0.02 OrthoFinder output from all 47 species
Spa_g12493 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
Tin_g08845 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 422 572
IPR002885 Pentatricopeptide_repeat 343 368
IPR002885 Pentatricopeptide_repeat 149 196
No external refs found!