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  5. Sam_g39081

Sam_g39081


Description : regulatory protein *(AGO7) of transacting siRNA pathway & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39081
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171480 AGO7, ZIP,... Protein argonaute 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 OrthoFinder output from all 47 species
Adi_g024819 AGO9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06375 AGO9 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23145 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Aspi01Gene35022.t1 AGO1, Aspi01Gene35022 siRNA-binding factor *(AGO2) of non-canonical RdDM... 0.03 OrthoFinder output from all 47 species
Cba_g57125 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G040900.1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g05113 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g09447 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22733 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Dcu_g18764 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Dde_g07096 AGO9 siRNA-integrating factor *(AGO) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015464001 PNH, AGO10, ZLL Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
GSVIVT01018054001 PNH, AGO10, ZLL Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
LOC_Os06g39640.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g28850.1 AGO1, LOC_Os07g28850 Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
Len_g18589 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Lfl_g06710 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Lfl_g08357 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g18110.1 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Mp6g20400.1 AGO4, OCP11 siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Msp_g13472 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 OrthoFinder output from all 47 species
Msp_g21068 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
Ore_g05462 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Pir_g52026 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Pnu_g27710 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Ppi_g18600 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Smo110151 AGO1 Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
Smo232189 AGO1 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Solyc07g049500.3.1 AGO6, Solyc07g049500 siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Solyc09g082830.4.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Tin_g39101 AGO1 regulatory protein *(AGO7) of transacTing siRNA pathway... 0.02 OrthoFinder output from all 47 species
Zm00001e012276_P001 AGO1, Zm00001e012276 Protein argonaute 12 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e027670_P001 AGO1, Zm00001e027670 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Zm00001e041452_P004 AGO1, Zm00001e041452 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Zm00001e041497_P005 PNH, AGO10, ZLL,... Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 448 494
IPR014811 ArgoL1 259 307
IPR032474 Argonaute_N 117 249
IPR003100 PAZ_dom 334 434
IPR003165 Piwi 608 906
IPR032473 Argonaute_Mid_dom 504 564
No external refs found!