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  5. Lfl_g29258

Lfl_g29258


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g29258
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT3G15070 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G00070 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Azfi_s0079.g038411 No alias not classified & original description: CDS=856-2112 0.03 OrthoFinder output from all 47 species
Azfi_s0109.g045337 No alias not classified & original description: CDS=372-1700 0.03 OrthoFinder output from all 47 species
GSVIVT01011840001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01022107001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01022110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
LOC_Os02g05692.1 LOC_Os02g05692 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_35916g0010 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.04 OrthoFinder output from all 47 species
MA_4841455g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g52630 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc12g088740.2.1 Solyc12g088740 Probable E3 ubiquitin-protein ligase RHG1A... 0.03 OrthoFinder output from all 47 species
Zm00001e028021_P003 Zm00001e028021 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e028107_P001 Zm00001e028107 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e032327_P003 Zm00001e032327 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 711 753
No external refs found!