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  5. Sam_g38915

Sam_g38915


Description : regulatory component *(RPN8) of 26S proteasome & original description: none


Gene families : OG0003941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38915

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00224040 ATHMOV34, AE3,... Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Aop_g19244 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene17831.t1 ATHMOV34, AE3,... regulatory component *(RPN8) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025392 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dac_g00587 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
MA_14467g0010 ATHMOV34, AE3, RPN8A regulatory component RPN8 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Msp_g01997 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Smo174670 ATHMOV34, AE3, RPN8A Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Spa_g17475 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Tin_g26285 ATHMOV34, AE3, RPN8A regulatory component *(RPN8) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008233 peptidase activity IEA Interproscan
MF GO:0008237 metallopeptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR024969 Rpn11/EIF3F_C 240 351
IPR000555 JAMM/MPN+_dom 81 190
No external refs found!