Sam_g38827

Description : primase component *(POLA3) of DNA polymerase alpha complex & original description: none

Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g38827

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0242.g059810	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Cre06.g293000	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.01	OrthoFinder output from all 47 species
Ehy_g19206	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Gb_25310	No alias	Probable DNA primase large subunit OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_25312	No alias	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species
LOC_Os07g22400.2	LOC_Os07g22400	primase component POLA3 of DNA polymerase alpha complex	0.02	OrthoFinder output from all 47 species
MA_99205g0020	No alias	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species
Mp7g17480.1	No alias	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species
Zm00001e040751_P005	Zm00001e040751	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004146	dihydrofolate reductase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007238	DNA_primase_lsu_euk/arc	175	439

External Links

No external refs found!

Sam_g38827

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation