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  5. Sam_g38548

Sam_g38548


Description : SSU processome assembly factor *(IMP4) & original description: none


Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38548

Target Alias Description ECC score Gene Family Method Actions
Aev_g08248 IMP4 SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
Ceric.36G020800.1 IMP4, Ceric.36G020800 SSU processome assembly factor *(IMP4) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.22 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Mp2g04740.1 IMP4 SSU processome assembly factor (IMP4) 0.04 OrthoFinder output from all 47 species
Solyc01g007250.4.1 IMP4, Solyc01g007250 SSU processome assembly factor (IMP4) 0.02 OrthoFinder output from all 47 species
Zm00001e013140_P001 IMP4, Zm00001e013140 SSU processome assembly factor (IMP4) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 90 260
No external refs found!