Sam_g38444

Description : translation termination factor *(eRF3) & original description: none

Gene families : OG0004213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004213_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g38444

Target	Alias	Description	ECC score	Gene Family Method
AT1G18070	No alias	Translation elongation factor EF1A/initiation factor...	0.02	OrthoFinder output from all 47 species
Aob_g04268	No alias	translation termination factor *(eRF3) & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G096500.1	Ceric.02G096500	translation termination factor *(eRF3) & original...	0.03	OrthoFinder output from all 47 species
Cre06.g284750	No alias	Protein biosynthesis.translation termination.eRF3...	0.01	OrthoFinder output from all 47 species
Lfl_g34425	No alias	translation termination factor *(eRF3) & original...	0.02	OrthoFinder output from all 47 species
MA_10428053g0010	No alias	Elongation factor 1-alpha OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
Ore_g31302	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g16691	No alias	translation termination factor *(eRF3) & original...	0.02	OrthoFinder output from all 47 species
Spa_g00747	No alias	translation termination factor *(eRF3) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e040640_P002	Zm00001e040640	eRF3 peptide release factor	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005730	nucleolus	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	393	459
IPR000795	T_Tr_GTP-bd_dom	149	355
IPR004160	Transl_elong_EFTu/EF1A_C	466	576

External Links

No external refs found!