Sam_g38181


Description : SSU processome assembly factor *(MPP10) & original description: none


Gene families : OG0005340 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005340_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38181

Target Alias Description ECC score Gene Family Method Actions
AT5G66540 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
Aop_g12257 No alias SSU processome assembly factor *(MPP10) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0064.g035641 No alias SSU processome assembly factor *(MPP10) & original... 0.03 OrthoFinder output from all 47 species
Ceric.03G006200.1 Ceric.03G006200 SSU processome assembly factor *(MPP10) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G070300.1 Ceric.07G070300 SSU processome assembly factor *(MPP10) & original... 0.04 OrthoFinder output from all 47 species
Cre08.g370601 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
MA_77639g0010 No alias SSU processome assembly factor (MPP10) 0.03 OrthoFinder output from all 47 species
Mp3g11980.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp8g00320.1 No alias SSU processome assembly factor (MPP10) 0.03 OrthoFinder output from all 47 species
Msp_g07866 No alias SSU processome assembly factor *(MPP10) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g112820.4.1 Solyc03g112820 SSU processome assembly factor (MPP10) 0.03 OrthoFinder output from all 47 species
Zm00001e032203_P002 Zm00001e032203 SSU processome assembly factor (MPP10) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0034457 Mpp10 complex IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR012173 Mpp10 57 284
IPR012173 Mpp10 339 533
No external refs found!