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  5. Sam_g38172

Sam_g38172


Description : not classified & original description: none


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g38172

Target Alias Description ECC score Gene Family Method Actions
Aob_g03663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 117 163
No external refs found!