1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g37605

Sam_g37605


Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37605
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Adi_g019442 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aev_g34034 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ala_g09045 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Als_g29069 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aob_g02402 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aop_g13675 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Aspi01Gene25993.t1 Aspi01Gene25993 component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33440.t2 Aspi01Gene33440 component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Azfi_s0253.g060398 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Dde_g04458 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01025102001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
Lfl_g34846 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
MA_26070g0010 No alias component NOT4 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Solyc06g005190.4.1 Solyc06g005190 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Solyc11g072590.3.1 Solyc11g072590 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Zm00001e023935_P001 Zm00001e023935 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 133 189
No external refs found!