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  5. Sam_g37440

Sam_g37440


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0006591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37440

Target Alias Description ECC score Gene Family Method Actions
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g025716 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04003 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Aop_g11417 No alias plastidial RNA processing factor *(PPR287) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene44048.t1 Aspi01Gene44048 plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012349 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037533 No alias plastidial RNA processing factor *(PPR287) & original... 0.07 OrthoFinder output from all 47 species
Ceric.05G093600.1 Ceric.05G093600 plastidial RNA processing factor *(PPR287) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g13401 No alias plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
Dde_g18148 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.04 OrthoFinder output from all 47 species
Gb_28778 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
LOC_Os08g09270.1 LOC_Os08g09270 plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Len_g13430 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.01 OrthoFinder output from all 47 species
Msp_g11145 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g30607 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017893 No alias not classified & original description: CDS=29-517 0.03 OrthoFinder output from all 47 species
Solyc07g043600.4.1 Solyc07g043600 plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Zm00001e039973_P002 Zm00001e039973 plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032954 regulation of cytokinetic process IEP HCCA
BP GO:0032955 regulation of division septum assembly IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051301 cell division IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1901891 regulation of cell septum assembly IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 256 301
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 185 234
IPR002885 Pentatricopeptide_repeat 467 496
IPR002885 Pentatricopeptide_repeat 155 183
IPR002885 Pentatricopeptide_repeat 311 371
No external refs found!