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  5. Sam_g36733

Sam_g36733


Description : component *(SMC6) of homologous recombination repair Smc5-Smc6 complex & original description: none


Gene families : OG0004807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36733

Target Alias Description ECC score Gene Family Method Actions
AT5G07660 SMC6A structural maintenance of chromosomes 6A 0.03 OrthoFinder output from all 47 species
AT5G61460 ATRAD18, SMC6B, MIM P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Adi_g081122 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Aop_g09177 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Cba_g14526 ATRAD18, SMC6B, MIM component *(SMC6) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Ceric.03G053800.1 ATRAD18, SMC6B,... component *(SMC6) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Mp7g10380.1 ATRAD18, SMC6B, MIM component SMC6 of homologous recombination repair... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140664 ATP-dependent DNA damage sensor activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR038729 Rad50/SbcC_AAA 16 288
No external refs found!