Sam_g36645

Description : KNOX-type transcription factor & original description: none

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g36645

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00165180	KNAT6, KNAT6L,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.02	OrthoFinder output from all 47 species
Adi_g048010	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060986	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15588	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g22220	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g27530	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000431	KNAT7, IXR11	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009595	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: CDS=1-1050	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016023	KNAT6, KNAT6L, KNAT6S	not classified & original description: CDS=247-1020	0.02	OrthoFinder output from all 47 species
Azfi_s0350.g066569	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: CDS=1-1488	0.04	OrthoFinder output from all 47 species
Azfi_s0574.g078063	KNAT3	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0637.g080498	KNAT4	KNOX-type transcription factor & original description: CDS=1-810	0.03	OrthoFinder output from all 47 species
Cba_g09026	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g20746	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12162	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01004811001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01007715001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01013790001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01030488001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Gb_00573	BUM1, SHL, STM,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os01g19694.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
LOC_Os02g08544.1	KNAT3, LOC_Os02g08544	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g51690.2	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
LOC_Os03g51710.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
LOC_Os05g03884.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
MA_3582g0010	KNAT3	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Pir_g25018	KNAT6, KNAT6L, KNAT6S	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g02102	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17826	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g20569	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g10499	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005308	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633	KNAT7, IXR11	not classified & original description: CDS=1-1266	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803	No alias	not classified & original description: CDS=20-451	0.03	OrthoFinder output from all 47 species
Sam_g01264	No alias	KNOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Solyc02g081120.4.1	BUM1, SHL, STM,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc04g077210.3.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc05g005090.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Spa_g40064	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e005545_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e005547_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e011538_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e017489_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.06	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e032761_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	321	360
IPR005541	KNOX2	411	454
IPR008422	Homeobox_KN_domain	592	631

External Links

No external refs found!

Sam_g36645

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation