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  5. Sam_g36402

Sam_g36402


Description : component *(eL31) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000630 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000630_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36402
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00233860 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 OrthoFinder output from all 47 species
AT2G19740 No alias Ribosomal protein L31e family protein 0.03 OrthoFinder output from all 47 species
AT4G26230 No alias Ribosomal protein L31e family protein 0.03 OrthoFinder output from all 47 species
AT5G56710 No alias Ribosomal protein L31e family protein 0.1 OrthoFinder output from all 47 species
Adi_g022958 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g031205 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g048332 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g113545 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g120495 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g125930 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00383 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g19969 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Als_g05320 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g11606 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g24458 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g41863 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g58224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07507 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aob_g15633 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g20599 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g29195 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g33204 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aop_g50668 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g50669 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene42542.t1 Aspi01Gene42542 component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45329.t1 Aspi01Gene45329 component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0108.g045264 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Cba_g08010 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g08011 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.13G014100.1 Ceric.13G014100 component *(eL31) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.24G003800.1 Ceric.24G003800 component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020703.20 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder output from all 47 species
Cre12.g489153 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Dac_g07183 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dac_g26744 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dac_g26920 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g44906 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g30287 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g30645 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Dcu_g38330 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dcu_g45156 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g37011 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g45427 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01015251001 No alias 60S ribosomal protein L31 OS=Nicotiana glutinosa 0.19 OrthoFinder output from all 47 species
GSVIVT01032061001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_05851 No alias component RPL31 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Gb_24728 No alias component RPL31 of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os02g48660.1 LOC_Os02g48660 component RPL31 of LSU proteome component 0.17 OrthoFinder output from all 47 species
LOC_Os06g21480.1 LOC_Os06g21480 component RPL31 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os08g39500.1 LOC_Os08g39500 component RPL31 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g03010 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Len_g14130 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g18251 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g35134 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_14317g0010 No alias component RPL31 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp7g18320.1 No alias component RPL31 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Ore_g04896 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g42240 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g58237 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g58363 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c10_8090V3.1 Pp3c10_8090 Ribosomal protein L31e family protein 0.14 OrthoFinder output from all 47 species
Pp3c14_7550V3.1 Pp3c14_7550 Ribosomal protein L31e family protein 0.11 OrthoFinder output from all 47 species
Pp3c1_34390V3.1 Pp3c1_34390 Ribosomal protein L31e family protein 0.07 OrthoFinder output from all 47 species
Pp3c25_8980V3.1 Pp3c25_8980 Ribosomal protein L31e family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_16490V3.1 Pp3c2_16490 Ribosomal protein L31e family protein 0.13 OrthoFinder output from all 47 species
Ppi_g02505 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g16789 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g19345 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g19792 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g22327 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22733 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g51464 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g55066 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05538 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g05859 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g09097 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g42614 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo268515 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Solyc05g008010.3.1 Solyc05g008010 component RPL31 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc12g008720.2.1 Solyc12g008720 component RPL31 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Spa_g05504 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Spa_g23525 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Spa_g43533 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g25963 No alias component *(eL31) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Zm00001e003520_P001 Zm00001e003520 component RPL31 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Zm00001e023413_P001 Zm00001e023413 component RPL31 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e036927_P001 Zm00001e036927 component RPL31 of LSU proteome component 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000054 Ribosomal_L31e 41 122
No external refs found!