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  5. Sam_g36194

Sam_g36194


Description : not classified & original description: none


Gene families : OG0001935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36194
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00201040 TPR16,... DnaJ protein P58IPK homolog OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G41520 TPR15 Heat shock protein DnaJ with tetratricopeptide repeat 0.05 OrthoFinder output from all 47 species
AT5G12430 TPR16 Heat shock protein DnaJ with tetratricopeptide repeat 0.06 OrthoFinder output from all 47 species
Adi_g069297 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087219 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087246 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12835 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04505 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33144 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13510 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G058300.1 TPR16, Ceric.28G058300 not classified & original description: pacid=50570376... 0.03 OrthoFinder output from all 47 species
Ceric.31G035700.1 TPR16, Ceric.31G035700 not classified & original description: pacid=50573879... 0.05 OrthoFinder output from all 47 species
Dcu_g12352 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02947 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01005044001 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031545001 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os05g31056.1 TPR16, LOC_Os05g31056 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os05g31062.1 TPR16, LOC_Os05g31062 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_7383g0010 TPR16 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g16220.1 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g32560 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35893 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g39794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20467 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02425 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g016410.3.1 TPR16, Solyc04g016410 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e026765_P001 Zm00001e026765 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e031378_P001 TPR16, Zm00001e031378 TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 1320 1403
No external refs found!