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  5. Sam_g36021

Sam_g36021


Description : not classified & original description: none


Gene families : OG0001767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36021
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT4G12640 No alias RNA recognition motif (RRM)-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g089075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12438 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Aob_g25752 FPA regulatory protein *(FPA) of TNL-mediated... 0.02 OrthoFinder output from all 47 species
Cba_g11671 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G013200.1 FPA, Ceric.11G013200 not classified & original description: pacid=50595357... 0.03 OrthoFinder output from all 47 species
Ceric.17G044800.1 FPA, Ceric.17G044800 not classified & original description: pacid=50618567... 0.04 OrthoFinder output from all 47 species
Dcu_g12725 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20663 FPA not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010842001 FPA Flowering time control protein FPA OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
LOC_Os09g34070.1 FPA, LOC_Os09g34070 Flowering time control protein FPA OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Len_g00757 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08464 FPA not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_61973g0010 No alias Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g06830.1 FPA Flowering time control protein FPA OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g10154 FPA regulatory protein *(FPA) of TNL-mediated... 0.02 OrthoFinder output from all 47 species
Ore_g18347 FPA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19678 FPA not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37666 FPA not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g10938 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Spa_g06752 FPA regulatory protein *(FPA) of TNL-mediated... 0.03 OrthoFinder output from all 47 species
Zm00001e033753_P002 Zm00001e033753 Flowering time control protein FPA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e034721_P001 FPA, Zm00001e034721 Flowering time control protein FPA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 65 128
IPR000504 RRM_dom 251 307
IPR000504 RRM_dom 143 206
IPR012921 SPOC_C 467 578
No external refs found!