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  5. Sam_g35773

Sam_g35773


Description : E3 ubiquitin ligase *(XBAT3) & original description: none


Gene families : OG0000851 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000851_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35773
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Adi_g060605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40158 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08783 XBAT31 E3 ubiquitin ligase *(XBAT3) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g02130.1 XBAT31, LOC_Os05g02130 RING-HC-class E3 ligase 0.05 OrthoFinder output from all 47 species
Ore_g08391 XBAT31 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g066020.2.1 XBAT31, Solyc11g066020 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 119 183
IPR002110 Ankyrin_rpt 17 114
IPR002110 Ankyrin_rpt 204 244
No external refs found!