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  5. Sam_g35505

Sam_g35505


Description : not classified & original description: none


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35505
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Aev_g02433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g02541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g27723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23936 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g34117 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g01529 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06534.t1 Aspi01Gene06534 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g03217 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.29G029100.1 Ceric.29G029100 not classified & original description: pacid=50624979... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021617.18 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02819 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g11697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032197001 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g61120.1 LOC_Os01g61120 Protein RETICULATA-RELATED 6, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72710.1 LOC_Os01g72710 Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g11651 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g35960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10212503g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g12361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02954 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g20912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20049 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g38821 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g08153 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012586 No alias not classified & original description: CDS=235-2685 0.05 OrthoFinder output from all 47 species
Solyc01g087750.4.1 Solyc01g087750 Protein RETICULATA-RELATED 4, chloroplastic... 0.12 OrthoFinder output from all 47 species
Solyc11g065490.2.1 Solyc11g065490 Protein RETICULATA-RELATED 4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Spa_g07578 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13626 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g19385 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e018574_P001 Zm00001e018574 Protein RETICULATA-RELATED 4, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 181 357
No external refs found!