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  5. Sam_g35483

Sam_g35483


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35483
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Aop_g11198 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45727.t1 CIP111, Aspi01Gene45727 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025331_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004555 alpha,alpha-trehalase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0015927 trehalase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 34 115
IPR004201 Cdc48_dom2 136 199
IPR041569 AAA_lid_3 401 442
IPR041569 AAA_lid_3 677 718
IPR015415 Vps4_C 727 768
IPR003959 ATPase_AAA_core 249 378
IPR003959 ATPase_AAA_core 522 655
No external refs found!