Sam_g35469


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35469
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00023600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g50270... 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097993 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10633 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13785 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31186 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04438 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04456 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06739 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g07129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18037 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18790 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18887 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g26563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11079 CRR21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27470 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g18085 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54043.t1 Aspi01Gene54043 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70773.t1 OTP84, Aspi01Gene70773 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000142 No alias not classified & original description: CDS=1-1389 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007441 No alias not classified & original description: CDS=1-1959 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009330 REME1 not classified & original description: CDS=41-1351 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012300 No alias not classified & original description: CDS=1-1938 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012535 No alias not classified & original description: CDS=1-2328 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013978 CRR22 not classified & original description: CDS=1-2136 0.01 OrthoFinder output from all 47 species
Azfi_s0021.g015639 No alias not classified & original description: CDS=1-1713 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026834 No alias not classified & original description: CDS=1-1929 0.02 OrthoFinder output from all 47 species
Azfi_s0043.g026960 No alias not classified & original description: CDS=1-4971 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g030112 No alias not classified & original description: CDS=94-318 0.01 OrthoFinder output from all 47 species
Azfi_s0062.g035255 No alias not classified & original description: CDS=1-1599 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036422 No alias not classified & original description: CDS=1-2670 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037188 CRR22 not classified & original description: CDS=1-1875 0.01 OrthoFinder output from all 47 species
Azfi_s0077.g038002 No alias not classified & original description: CDS=1-2019 0.02 OrthoFinder output from all 47 species
Azfi_s0093.g043298 OSB3 ssDNA-binding protein *(OSB) & original description: CDS=1-1062 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043572 No alias not classified & original description: CDS=1-2958 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043616 No alias not classified & original description: CDS=1-3288 0.02 OrthoFinder output from all 47 species
Azfi_s0117.g046522 No alias not classified & original description: CDS=125-2725 0.03 OrthoFinder output from all 47 species
Azfi_s0579.g078277 No alias not classified & original description: CDS=1-1956 0.02 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g18562 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19300 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g21995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g44396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75269 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G103800.1 Ceric.04G103800 not classified & original description: pacid=50630749... 0.03 OrthoFinder output from all 47 species
Ceric.05G065200.1 Ceric.05G065200 not classified & original description: pacid=50577782... 0.02 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.02 OrthoFinder output from all 47 species
Ceric.08G020400.1 OTP84, Ceric.08G020400 not classified & original description: pacid=50638334... 0.02 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.01 OrthoFinder output from all 47 species
Ceric.12G060700.1 Ceric.12G060700 not classified & original description: pacid=50600993... 0.03 OrthoFinder output from all 47 species
Ceric.13G001600.1 Ceric.13G001600 not classified & original description: pacid=50636694... 0.02 OrthoFinder output from all 47 species
Ceric.17G054900.1 DOT4, Ceric.17G054900 not classified & original description: pacid=50617812... 0.03 OrthoFinder output from all 47 species
Ceric.17G074800.1 Ceric.17G074800 not classified & original description: pacid=50618293... 0.01 OrthoFinder output from all 47 species
Ceric.18G000200.1 Ceric.18G000200 not classified & original description: pacid=50622455... 0.03 OrthoFinder output from all 47 species
Ceric.18G023200.1 Ceric.18G023200 not classified & original description: pacid=50622130... 0.02 OrthoFinder output from all 47 species
Ceric.21G010300.1 Ceric.21G010300 not classified & original description: pacid=50603707... 0.01 OrthoFinder output from all 47 species
Ceric.21G062600.1 Ceric.21G062600 not classified & original description: pacid=50603664... 0.02 OrthoFinder output from all 47 species
Ceric.27G020400.1 Ceric.27G020400 not classified & original description: pacid=50605502... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.01 OrthoFinder output from all 47 species
Ceric.28G069900.1 Ceric.28G069900 not classified & original description: pacid=50570610... 0.02 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.01 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g28556 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35435 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g44017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46783 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g49993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50518 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.01 OrthoFinder output from all 47 species
GSVIVT01031733001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Len_g17572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38362 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g11258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13253 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g23170 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g20273 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06420 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23510 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g06978 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17865 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g03998 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62708 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006149 No alias not classified & original description: CDS=1-2199 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018727 No alias not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Sam_g09474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49237 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105197 CRR22 Pentatricopeptide repeat-containing protein At3g49710... 0.02 OrthoFinder output from all 47 species
Solyc05g023900.1.1 Solyc05g023900 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15290 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18774 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04160 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25192 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038850_P001 EMB2758, Zm00001e038850 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 625 672
IPR002885 Pentatricopeptide_repeat 727 774
IPR002885 Pentatricopeptide_repeat 524 570
IPR002885 Pentatricopeptide_repeat 422 468
IPR002885 Pentatricopeptide_repeat 116 163
IPR002885 Pentatricopeptide_repeat 219 255
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 17 40
IPR002885 Pentatricopeptide_repeat 498 523
IPR002885 Pentatricopeptide_repeat 797 826
No external refs found!