Sam_g35326 details

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ECC Pair graph <li><a href="#expression_profile">Profile</a></li> <li><a href="#coexpression_networks">Networks</a></li> <li><a href="#expression_conservation">ECC</a></li> <li><a href="#annotation">Annotation</a></li> <li><a href="#links">Links</a></li> </ul> </nav> </div> <ol class="breadcrumb"> <li><a href="/">Home</a></li> <li><a href="/species/">Species</a></li> <li><a href="/species/view/19"><em>Salvinia molesta</em></a></li> <li>Sequence</li> <li class="active"><strong>Sam_g35326</strong></li> </ol> <h1><strong>Sam_g35326</strong></h1> <br> <p><strong>Description : </strong> mitochondrial RNA splicing factor *(RUG3) & original description: none</p> <br> <div> <p><strong><abbr title="Click to show help" href="/help/gene_family" data-target="#helpModal">Gene families</abbr> : </strong><a href="/family/view/1237538">OG0007937</a> (OrthoFinder output from all 47 species) Phylogenetic Tree(s): <a href="/tree/view/649617">OG0007937_tree</a> </p> <p><strong>Sequence :</strong> <a href="/sequence/modal/coding/933570" data-target="#profileModal">coding</a> (<a href="/sequence/fasta/coding/933570">download</a>), <a href="/sequence/modal/protein/933570" data-target="#profileModal">protein</a> (<a href="/sequence/fasta/protein/933570">download</a>) </p> </div> <h3 class="banner-blue" id="expression_profile">Expression Profile</h3> <br> <span class="warning-message"><i class="fa fa-exclamation-triangle" aria-hidden="true"></i> <strong>Attention:</strong> This gene has <strong><abbr title="Click to show help" href="/help/lowabundance" data-target="#helpModal">low abundance</abbr></strong>.</span> <br><br> <div class="pull-right"> <a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a> <a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a> </div> <div style="height:550px; max-height:550px; margin-top:30px"> <canvas id="expression-profile" class="center-block" height="550"/> </div> <br> <div class="pull-right"> <a href="/profile/download/plot/1700816" class="btn btn-primary" download="plot_1700816.txt">Download</a> </div> <p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available <a href="/profile/view/1700816">here</a>.</p> <br> <div> <h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR: <strong>Sam_g35326</strong></td> <td><a href="/network/download/neighbors/4202158" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_4202158.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/4202158" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> <tr> <td><abbr title="Click to show help" href="/help/cluster" data-target="#helpModal">Cluster</abbr></td> <td>HCCA: <strong><a href="/cluster/view/49474" class="qtip_tooltip" qtip_href="/cluster/tooltip/49474">Cluster_146</a></strong></td> <td><a href="/cluster/view/49474" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/49474" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/49474" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/49474" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <h3 class="banner-blue" id="expression_conservation">Expression Context Conservation (<abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr>)</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="ecc_hits_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Target</th> <th data-sort="string-ins"><span class="sort-icon"></span>Alias</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th data-sort="float"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr> score</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><a href="/sequence/view/1373300" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1373300">AT5G60870</a></td> <td><span class="text-muted">No alias</span></td> <td>Regulator of chromosome condensation (RCC1) family protein</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291433" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2541036" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2541036">Adi_g109585</a></td> <td><span class="text-muted">No alias</span></td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291445" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/1190688" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/1190688">Als_g29907</a></td> <td><span class="text-muted">No alias</span></td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291459" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2398639" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2398639">Azfi_s0226.g058985</a></td> <td><span class="text-muted">No alias</span></td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.03</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291467" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2344522" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2344522">Ceric.04G013900.1</a></td> <td>Ceric.04G013900</td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.03</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291473" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/2105038" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/2105038">Dcu_g02834</a></td> <td><span class="text-muted">No alias</span></td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.03</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291485" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/473272" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/473272">Len_g50888</a></td> <td><span class="text-muted">No alias</span></td> <td>mitochondrial RNA splicing factor *(RUG3) & original...</td> <td>0.02</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/43291495" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/933570/90/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3058" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain." [https://www.ebi.ac.uk/merops/about/glossary.shtml#AMINOPEPTIDASE, PMID:24157837]">GO:0004177</a></td> <td class="col-xs-6">aminopeptidase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3234" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix." [GOC:jl]">GO:0004386</a></td> <td class="col-xs-6">helicase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4118" data-toggle="tooltip" data-placement="top" title=""Binding to GTP, guanosine triphosphate." [GOC:ai]">GO:0005525</a></td> <td class="col-xs-6">GTP binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/6208" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions." [GOC:mah, https://www.ebi.ac.uk/merops/about/glossary.shtml]">GO:0008235</a></td> <td class="col-xs-6">metalloexopeptidase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/6211" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both." [https://www.ebi.ac.uk/merops/about/glossary.shtml#EXOPEPTIDASE]">GO:0008238</a></td> <td class="col-xs-6">exopeptidase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/11760" data-toggle="tooltip" data-placement="top" title=""Binding to a guanyl nucleotide, consisting of guanosine esterified with (ortho)phosphate." [ISBN:0198506732]">GO:0019001</a></td> <td class="col-xs-6">guanyl nucleotide binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13515" data-toggle="tooltip" data-placement="top" title=""Binding to a manganese ion (Mn)." [GOC:ai]">GO:0030145</a></td> <td class="col-xs-6">manganese ion binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/15755" data-toggle="tooltip" data-placement="top" title=""Binding to a guanyl ribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah]">GO:0032561</a></td> <td class="col-xs-6">guanyl ribonucleotide binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/31047" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions." [https://www.ebi.ac.uk/merops/about/glossary.shtml#AMINOPEPTIDASE]">GO:0070006</a></td> <td class="col-xs-6">metalloaminopeptidase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">108</td> <td class="col-xs-2">134</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">290</td> <td class="col-xs-2">344</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">452</td> <td class="col-xs-2">502</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">237</td> <td class="col-xs-2">287</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">399</td> <td class="col-xs-2">448</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">187</td> <td class="col-xs-2">234</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/323">IPR000408</a></td> <td class="col-xs-5">Reg_chr_condens</td> <td class="col-xs-2">348</td> <td class="col-xs-2">396</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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