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  5. Sam_g35222

Sam_g35222


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g35222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.06 OrthoFinder output from all 47 species
AT2G03110 No alias RNA binding;nucleic acid binding 0.02 OrthoFinder output from all 47 species
Adi_g012562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g019265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042794 No alias not classified & original description: CDS=151-1857 0.02 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06976 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_38220 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Lfl_g03080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429211g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g04932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g36442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05810 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g05936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008079 No alias not classified & original description: CDS=527-2194 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015180 No alias E3 ubiquitin ligase *(STUBL1/3) & original description:... 0.04 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc12g055780.3.1 Solyc12g055780 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Spa_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001825_P001 Zm00001e001825 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 209 275
IPR004088 KH_dom_type_1 349 396
IPR004088 KH_dom_type_1 62 111
IPR004088 KH_dom_type_1 434 500
No external refs found!