Lfl_g28864


Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28864
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
ATCG00800 No alias structural constituent of ribosome 0.21 OrthoFinder output from all 47 species
Aev_g14422 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.21 OrthoFinder output from all 47 species
Cba_g05105 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.05G042400.1 Ceric.05G042400 component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Ceric.05G052300.1 Ceric.05G052300 component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.07G056500.1 Ceric.07G056500 component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.1Z164000.1 Ceric.1Z164000 not classified & original description: pacid=50596956... 0.07 OrthoFinder output from all 47 species
Ceric.21G034000.1 Ceric.21G034000 not classified & original description: pacid=50603405... 0.03 OrthoFinder output from all 47 species
Ceric.29G004400.1 Ceric.29G004400 component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.38G009200.1 Ceric.38G009200 component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Dcu_g13090 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Gb_15033 No alias component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os04g16824.1 LOC_Os04g16824 component psRPS3 of small ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
LOC_Os09g24416.1 LOC_Os09g24416 component psRPS3 of small ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Msp_g15785 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g10343 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Pir_g00314 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730 No alias not classified & original description: CDS=1-393 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Zm00001e003906_P001 Zm00001e003906 component psRPS3 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Zm00001e009620_P001 Zm00001e009620 component psRPS3 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Zm00001e011301_P001 Zm00001e011301 component psRPS3 of small ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Zm00001e042063_P001 Zm00001e042063 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042087_P001 Zm00001e042087 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e042094_P001 Zm00001e042094 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042375_P001 Zm00001e042375 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042402_P001 Zm00001e042402 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042447_P001 Zm00001e042447 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 131 213
No external refs found!