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  5. Lfl_g28710

Lfl_g28710


Description : manganese/calcium cation transporter *(BICAT) & original description: none


Gene families : OG0000681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000681_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28710
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT5G36290 No alias Uncharacterized protein family (UPF0016) 0.05 OrthoFinder output from all 47 species
Ala_g09890 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Ala_g15060 No alias manganese/calcium cation transporter *(BICAT) & original... 0.04 OrthoFinder output from all 47 species
Aob_g01216 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene36665.t1 Aspi01Gene36665 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g28435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021435.42 No alias GDT1-like protein 5 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
LOC_Os11g28300.1 LOC_Os11g28300 manganese/calcium cation transporter (BICAT) 0.02 OrthoFinder output from all 47 species
Ore_g03948 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004059 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species
Tin_g04357 No alias manganese/calcium cation transporter *(BICAT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001727 Gdt1 53 123
No external refs found!