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  5. Sam_g31428

Sam_g31428


Description : component *(eL28) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g31428
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT4G29410 No alias Ribosomal L28e protein family 0.01 OrthoFinder output from all 47 species
Adi_g012704 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00977 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Cba_g70104 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cre11.g467578 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dcu_g14613 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01016895001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01035350001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Gb_38783 No alias component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os02g57540.1 LOC_Os02g57540 component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Lfl_g33421 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10428490g0010 No alias component RPL28 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pir_g03637 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g60467 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pp3c17_14060V3.1 Pp3c17_14060 Ribosomal L28e protein family 0.01 OrthoFinder output from all 47 species
Sam_g05292 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g06118 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Sam_g14505 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31492 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g37199 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g43777 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo164298 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Spa_g21825 No alias component *(eL28) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e026410_P001 Zm00001e026410 component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e032283_P002 Zm00001e032283 component RPL28 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 6 121
No external refs found!