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  5. AMTR_s00029p00183640

AMTR_s00029p00183640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.245

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000116 (LandPlants) Phylogenetic Tree(s): OG_02_0000116_tree ,
OG_03_0000157 (SeedPlants) Phylogenetic Tree(s): OG_03_0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00183640
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AT4G00540 ATMYB3R2,... myb domain protein 3r2 0.03 Archaeplastida
GSVIVT01009566001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Solyc01g111500.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g052850.3.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc11g072060.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e012156_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e015125_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e028744_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc05g052850.3.1 No alias transcription factor (MYB) 0.04 LandPlants
Zm00001e012156_P001 No alias No annotation 0.03 LandPlants
Zm00001e028744_P002 No alias transcription factor (MYB) 0.03 LandPlants
Solyc05g052850.3.1 No alias transcription factor (MYB) 0.04 SeedPlants
Zm00001e028744_P002 No alias transcription factor (MYB) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001005 SANT/Myb 9 54
IPR001005 SANT/Myb 61 105
No external refs found!