Sam_g30394

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g30394
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AT2G46530	ARF11	auxin response factor 11	0.02	OrthoFinder output from all 47 species
Adi_g014286	ARF4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g020207	ARF9	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088063	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g103007	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33345	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0934.g093100	ARF6	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g11871	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g23659	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10022392g0010	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
MA_85955g0010	ARF19, IAA22, ARF11	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g13825	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26452	ARF10	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261	TIR5, MSG1,...	not classified & original description: CDS=484-2670	0.02	OrthoFinder output from all 47 species
Zm00001e023038_P001	ARF10, Zm00001e023038	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	150	251
IPR033389	AUX/IAA_dom	669	772
IPR010525	ARF_dom	277	357

External Links

No external refs found!

Sam_g30394

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation